LOCUS NM_019642 2718 bp mRNA linear ROD 25-AUG-2004
DEFINITION Mus musculus ribophorin II (Rpn2), mRNA.
ACCESSION NM_019642
VERSION NM_019642.3 GI:35215296
KEYWORDS .
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus.
REFERENCE 1 (bases 1 to 2718)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2
AUTHORS The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I & II Team.
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 3
AUTHORS The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium.
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AK004968.1.
On Sep 25, 2003 this sequence version replaced gi:34996494.
FEATURES Location/Qualifiers
source 1..2718
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6J"
/db_xref="taxon:10090"
/chromosome="2"
/map="2 91.0 cM"
gene 1..2718
/gene="Rpn2"
/note="synonyms: Rpn-2, 1300012C06Rik"
/db_xref="GeneID:20014"
/db_xref="LocusID:20014"
/db_xref="MGI:98085"
CDS 227..2122
/gene="Rpn2"
/note="go_component: cellular_component unknown [goid
0008372] [evidence ND];
go_function: molecular_function unknown [goid 0005554]
[evidence ND];
go_process: biological_process unknown [goid 0000004]
[evidence ND]"
/codon_start=1
/product="ribophorin II"
/protein_id="NP_062616.2"
/db_xref="GI:34996495"
/db_xref="GeneID:20014"
/db_xref="LocusID:20014"
/db_xref="MGI:98085"
/translation="MAPPGSSAVFLLALTITASVQALTPTHYLTKQDVERLKASLDRP
FTDLESAFYSIVGLSSLGVQVPDVKKACTFIKSNLDPSNVDSLFYAAQSSQVLSGCEI
SVSNETKELLLAAVSEDSPIAQIYHAVAALSGFGLPLASNEALGALTARLGKEETVLA
TVQALQTASHLSQQADLRNIVEEIEDLVARLDELGGVYLQFEEGLELTALFVAATYKL
MDHVGTEPSMKEDQVIQLMNTIFSKKNFESLSEAFSVASAAAALSQNRYHVPVVVVPE
GSTSDTQEQAILRLQVSNVLSQPLAQAAVKLEHAKSAATRATVLQKTPFSLVGNVFEL
NFKNVKLSSGYYDFSVRVEGDSRYIANTVELRVKISTEVGITNVDLSTVDKDQSIAPK
TTRVTYPAKAKGTFIADSHQNFALFFQLVDVNTGAELTPHQTFVRLHNQKTGQEVVFV
AEPDNKNVYKFELDTSERKIEFDSASGTYTLYLIIGDATLKNPILWNVADVVIKFPEE
EAPSTVLSQSLFTPKQEIQHLFREPEKRPPTVVSNTFTALILSPLLLLFALWIRIGAN
VSNFTFAPSTVIFHLGHAAMLGLMYIYWTQLNMFQTLKYLAVLGTVTFLAGNRMLAQH
AVKRTAH"
polyA_signal 2697..2702
/gene="Rpn2"
/note="putative"
polyA_site 2718
/gene="Rpn2"
/note="putative"
ORIGIN
1 aaggacccgt gagtgaggtt cgcacgccgc gactcaactg ccccacactg cggctgccgg
61 gcacggccct gccaagcggg accgccgcga ctgacctttg ccgggagccc attctggcaa
121 gtggcgtgtg ccgcgggtcc ctggcgtccc ctccggcgcg ctcttggagc cacttcccgg
181 agcggaagtc tgcctgctcg ggctccggtg ggacctgctc ggaggaatgg cgccgccggg
241 ttcaagcgct gtcttcctgt tggccctgac aatcactgcc agcgtccagg ctctgacccc
301 cacccactac ctcaccaagc aggatgtgga aaggctgaag gcctcactgg accgcccctt
361 cacagatttg gagtctgcct tctactccat cgtgggactc agcagccttg gggtacaggt
421 gccagatgtc aagaaagcgt gtaccttcat caagtccaac cttgatccca gcaacgtgga
481 ttctctcttc tatgcagccc agtccagcca ggtcctctca ggctgtgaga tatctgtttc
541 aaatgagacc aaagagctcc tgctggcagc agtgagtgaa gactccccca ttgcccagat
601 ctaccatgca gttgcagcac tcagcgggtt tgggcttccc ttggcatcca atgaagccct
661 cggtgccctt accgctcgcc tcggcaagga agagactgtg ctagcaacgg tccaggctct
721 gcagacagcg tcccacctct cccagcaggc tgacctgagg aacattgtag aggagattga
781 ggaccttgtt gctcggctgg atgaactagg gggtgtgtat ctgcagtttg aggaaggact
841 ggagctcacg gcgctgtttg ttgctgccac ctacaagctc atggaccacg tggggaccga
901 accgtccatg aaggaggatc aggttatcca gctcatgaac acaatcttca gcaagaagaa
961 ctttgagtcc ctctcagaag ccttcagtgt ggcctctgct gctgctgcat tgtcccagaa
1021 tcgctaccac gtaccagtgg tggttgtgcc cgagggctct acttctgaca ctcaagaaca
1081 ggctatcctg aggttgcagg tcagcaatgt tttgtctcag cctctggctc aagctgcagt
1141 gaagctggag catgctaagt cggcggctac cagggctacc gtcctgcaga agacgccctt
1201 ttcgcttgtg gggaatgttt ttgagctaaa cttcaagaat gttaaacttt ccagtggcta
1261 ctatgacttc tctgtccgag ttgaaggtga cagccgttac attgcaaaca ctgtagagct
1321 tcgagtcaag atctccactg aagttggcat cacaaatgtt gatctttcca ctgtggataa
1381 ggatcagagc attgcaccca aaactacccg ggtgacctac ccagccaaag ccaagggtac
1441 attcatcgca gacagccatc agaactttgc cctgtttttc cagctggtag atgtgaacac
1501 cggtgcggag ctcacccctc accagacgtt tgttcgactt cataaccaga agactggcca
1561 ggaagtggtg tttgttgctg agccagataa caagaatgta tataagtttg aactggacac
1621 ctctgaaagg aagattgaat ttgactctgc ctctggcacc tacacactct acttaatcat
1681 cggggatgcc acattgaaga acccaatcct ctggaacgtg gctgacgtgg ttatcaagtt
1741 ccctgaggag gaagccccct cgactgtgct gtcccagagc ctgtttaccc caaaacagga
1801 aattcagcac ctgttccgag agcctgagaa gaggcccccc acagtggtgt ccaatacatt
1861 cacggccctc atcctctcgc ccttgctcct gctctttgca ctgtggatcc ggattggagc
1921 caatgtctcc aacttcacat ttgctcctag cacagttatc ttccacctgg gacatgctgc
1981 gatgctgggc ctcatgtata tctactggac tcagctcaac atgttccaga ccctcaagta
2041 cctggctgtc ctgggcactg tgacgtttct ggctggcaac cgaatgctgg cccagcatgc
2101 agttaagaga acagcacatt agttccagaa gaagtctgaa gaccctgaag gctgaaatga
2161 acatttaaca aggagtgggg acagttcatg gtgtgaaagg aagaactggg gacacaacag
2221 gagggaggag atgcctgttc gttaaaaaga gaaaagctga gctgtgctta catgtttact
2281 tgtttctcac tttttgcttc acagagcaga catgtttggg cccagattgt ctgtcccttt
2341 gtcttgatgc ctggcaagat gctgtgaata tcccaggcta cccagatgtt gtatttgaaa
2401 agttgaaatc tgtaattcat catcagcttt ggaataaaga gaatggtgga ctcccagtgt
2461 tgatggagcc ttgcatgtgt gatatgaaga ctcagcagtc ttcagttggg ccatctcacc
2521 cctttcttaa aagtactaaa agtggctaga aaaagcctgt gtcctttcgg ctccagtagc
2581 aaacactttg taggagccct gcttgtcttt gaagattctt ctcttcaaaa gacctgctct
2641 aggcttttgc cttgaacatt tgggcttggt gtgtagagaa gggttaaaat tttgtcaata
2701 aaaagctgac tgcctcgc