LOCUS NM_133933 3601 bp mRNA linear ROD 25-AUG-2004
DEFINITION Mus musculus ribophorin I (Rpn1), mRNA.
ACCESSION NM_133933
VERSION NM_133933.2 GI:31543604
KEYWORDS .
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus.
REFERENCE 1 (bases 1 to 3601)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3601)
AUTHORS Okazaki,Y., Furuno,M., Kasukawa,T., Adachi,J., Bono,H., Kondo,S.,
Nikaido,I., Osato,N., Saito,R., Suzuki,H., Yamanaka,I.,
Kiyosawa,H., Yagi,K., Tomaru,Y., Hasegawa,Y., Nogami,A.,
Schonbach,C., Gojobori,T., Baldarelli,R., Hill,D.P., Bult,C.,
Hume,D.A., Quackenbush,J., Schriml,L.M., Kanapin,A., Matsuda,H.,
Batalov,S., Beisel,K.W., Blake,J.A., Bradt,D., Brusic,V.,
Chothia,C., Corbani,L.E., Cousins,S., Dalla,E., Dragani,T.A.,
Fletcher,C.F., Forrest,A., Frazer,K.S., Gaasterland,T.,
Gariboldi,M., Gissi,C., Godzik,A., Gough,J., Grimmond,S.,
Gustincich,S., Hirokawa,N., Jackson,I.J., Jarvis,E.D., Kanai,A.,
Kawaji,H., Kawasawa,Y., Kedzierski,R.M., King,B.L., Konagaya,A.,
Kurochkin,I.V., Lee,Y., Lenhard,B., Lyons,P.A., Maglott,D.R.,
Maltais,L., Marchionni,L., McKenzie,L., Miki,H., Nagashima,T.,
Numata,K., Okido,T., Pavan,W.J., Pertea,G., Pesole,G.,
Petrovsky,N., Pillai,R., Pontius,J.U., Qi,D., Ramachandran,S.,
Ravasi,T., Reed,J.C., Reed,D.J., Reid,J., Ring,B.Z., Ringwald,M.,
Sandelin,A., Schneider,C., Semple,C.A., Setou,M., Shimada,K.,
Sultana,R., Takenaka,Y., Taylor,M.S., Teasdale,R.D., Tomita,M.,
Verardo,R., Wagner,L., Wahlestedt,C., Wang,Y., Watanabe,Y.,
Wells,C., Wilming,L.G., Wynshaw-Boris,A., Yanagisawa,M., Yang,I.,
Yang,L., Yuan,Z., Zavolan,M., Zhu,Y., Zimmer,A., Carninci,P.,
Hayatsu,N., Hirozane-Kishikawa,T., Konno,H., Nakamura,M.,
Sakazume,N., Sato,K., Shiraki,T., Waki,K., Kawai,J., Aizawa,K.,
Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Miyazaki,A., Sakai,K., Sasaki,D., Shibata,K.,
Shinagawa,A., Yasunishi,A., Yoshino,M., Waterston,R., Lander,E.S.,
Rogers,J., Birney,E. and Hayashizaki,Y.
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420 (6915), 563-573 (2002)
PUBMED 12466851
REFERENCE 3
AUTHORS The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I & II Team.
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 4 (bases 1 to 3601)
AUTHORS Bonaldo,M.F., Lennon,G. and Soares,M.B.
TITLE Normalization and subtraction: two approaches to facilitate gene
discovery
JOURNAL Genome Res. 6 (9), 791-806 (1996)
PUBMED 8889548
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AK029923.1.
On Jun 9, 2003 this sequence version replaced gi:19527151.
FEATURES Location/Qualifiers
source 1..3601
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6J"
/db_xref="taxon:10090"
/chromosome="6"
/map="6 38.0 cM"
gene 1..3601
/gene="Rpn1"
/note="synonyms: Rpn-1, D6Wsu137e"
/db_xref="GeneID:103963"
/db_xref="LocusID:103963"
/db_xref="MGI:98084"
CDS 17..1843
/gene="Rpn1"
/note="go_component: extracellular space [goid 0005615]
[evidence TAS] [pmid 12466851];
go_component: integral to membrane [goid 0016021]
[evidence TAS] [pmid 12466851];
go_component: endoplasmic reticulum [goid 0005783]
[evidence ISS] [pmid 12466851];
go_function: transferase activity [goid 0016740] [evidence
ISS] [pmid 12466851];
go_function: dolichyl-diphosphooligosaccharide-protein
glycotransferase activity [goid 0004579] [evidence ISS]
[pmid 12466851];
go_process: protein amino acid glycosylation [goid
0006486] [evidence IEA]"
/codon_start=1
/product="ribophorin I"
/protein_id="NP_598694.2"
/db_xref="GI:31543605"
/db_xref="GeneID:103963"
/db_xref="LocusID:103963"
/db_xref="MGI:98084"
/translation="MESPVALLLLLLLCLGALAPTPGSASSEAPPLVNEDVKRTVDLS
SHLAKVTAEVVLVHPGGGSTSRASSFVLALEPELESRLAHLGVQIKGEDEEDNNLEVR
ETKIKGKSGRFFTVKLPVALDPGSKISVVVETVYTHVLHPYPTQITQSEKQFVVFEGN
HYFYSPYPTKTQTMRVKLASRNVESYTKLGNPSRSEDVLDYGPFKDIPAYSQDTFKVH
YENNSPFLTITSMTRVIEVSHWGIIAVEENVDLKHTGAVLKGPFSRYDYQRQPDSGIS
SIRSFKTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFGGWKTHYIVG
YNLPSYEYLYNLGDQYALKMRFVDHVFDEQVIDSLTVKIILPEGAKNIQVDSPYDISR
APDELHYTYLDTFGRPVIVAYKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVAAFYIL
FFTVIIYVRLDFSITKDPAAEARMKVACITEQVLTLVNKRLGLYRHFDETVNRYKQSR
DISTLNSGKKSLETEHKAVTSEIAVLQSRLKTEGSDLCDRVSEMQKLDAQVKELVLKS
AVEAERLVAGKLKKDTYLENEKLSSGKRQELVTKIDHILDAL"
polyA_signal 3581..3586
/gene="Rpn1"
/note="putative"
polyA_site 3601
/gene="Rpn1"
/note="putative"
ORIGIN
1 ggctcagctc gcggtcatgg agtcgccggt cgccttgctg ttgctgctgc tgctatgtct
61 cggggccttg gccccgacgc ccggcagcgc ctcctcggag gctccgccgc tggtcaacga
121 ggacgtgaag cgcacggtgg acctgagcag ccacctagcc aaggtgacgg ctgaggtggt
181 cctggtacac ccgggcggcg gctccacatc acgagccagc tctttcgttc tggccctgga
241 gccagaactg gagtcgcggc ttgcgcacct aggcgtgcag ataaagggag aagatgagga
301 agacaacaac ctagaagtac gagaaaccaa aattaaaggg aaaagtggga gatttttcac
361 ggtcaagctc ccagttgctc ttgatcctgg gtccaagatc tcggtcgttg tggaaactgt
421 ctacacccat gtgcttcatc cgtatccgac tcagataact cagtcagaga aacagttcgt
481 cgtgtttgag ggcaaccatt atttctactc tccctatcca acaaagaccc agaccatgcg
541 agtgaaactg gcgtcccgaa atgtggaaag ctataccaag ctggggaacc cctcgagatc
601 tgaggacgtc cttgattatg ggccttttaa agacatccct gcctacagtc aggacacttt
661 caaagtacat tacgagaaca atagcccttt cctgaccatc accagtatga cccgggtcat
721 cgaggtatct cactggggca ttattgctgt ggaagagaac gtggacttga agcacacggg
781 cgcagtgctg aaggggcctt tctcccgcta cgattaccag aggcagcctg acagtgggat
841 ctcctccatt cgttctttta agaccatcct tcctgctgcc gcccaggatg tctattaccg
901 ggatgagatt ggtaatgttt ccaccagcca cctccttatc ttggatgact ctgtggaaat
961 ggaaatccgg cctcgatttc ctctctttgg agggtggaag acacactaca tcgttggtta
1021 caacctccca agctatgaat acctctataa tctgggtgac cagtatgcac tgaagatgcg
1081 gtttgtagac cacgtgtttg atgagcaagt gatagattct ctgacagtga agatcatctt
1141 gcccgaggga gccaagaaca tccaggtgga cagtccctac gatatcagcc gggccccaga
1201 cgagctgcat tatacctacc tagacacgtt cggccgcccg gtgattgtgg cttacaagaa
1261 gaatctcgtc gagcaacaca ttcaggacat tgtggtgcac tacacgttca acaaggttct
1321 catgctgcag gagccgctgc tggtcgtggc cgccttctac atcctgttct tcaccgtcat
1381 catctacgtc cgtctggact tttccatcac caaggatcca gctgcagaag ccaggatgaa
1441 agtggcctgt atcacagagc aggtcttaac cctggtcaac aagaggctgg gcctctaccg
1501 tcactttgat gagactgtca atagatacaa gcagtcccgg gatatctcta ccctcaacag
1561 tggcaagaag agcctagaga cagagcacaa ggctgtgacc agcgagattg ctgtactgca
1621 gtctcggctg aagacggagg gctcagacct gtgtgacagg gtgagtgaga tgcagaagct
1681 ggacgcccag gtcaaggagc tggtcctgaa gtcggcggta gaagcagaga ggctggtggc
1741 tggcaagctc aagaaggata cgtacctgga aaacgagaag ctcagctcag gaaaacgcca
1801 ggagctggtc accaagatcg accacatcct ggatgctctg tagctcctgg ctccagagca
1861 ggcccaggtg cctagacttc cagtggcatt ggataggtag aaagaggagg ttgtggttag
1921 cccaaggcct caagacacca ctgaggcctg tccgtggcag tggcctatcc gtggcactgc
1981 gggaagcttg tcccttattt ctgaatggtt cccttttttt taaaaaagca aaaacctaga
2041 caaaaaattc tgtttaaaag acaaacttgg ctgtgttttg agcacaggcg tttcagcagt
2101 tgatgggtgg tttctgtttt gacagctggg gatttttctg tcttcaagtc ctgttttatg
2161 gtcttctgat ttctaatgtt tgggtctttt gtgagcgtat gcatggtttt ttaaaagtgt
2221 gtatgaccaa atgaaaataa aggagggact gtgaacattt gcttttgctg tactgaaaaa
2281 tctctcatgt aattctgaag tttggggata ttgcttttat caagatgggt tttcttgttg
2341 tgtgtgcaag gcaagtgtca gaacactgat acaagtctcg agaggcccag taaggtccgg
2401 aggccacaca acaggggtgg agtgagcctt tgtattcctt aaatctgtgc cacacgtgct
2461 gagcattaga aactgtgatg ggcgagcagt catggttcat aatctccaat tggccacact
2521 gtgaggaagt catggactgg agaacactgg gctaagtctg ggtgggtgtg tgtttgaggg
2581 gaggggagtc cagagctgag ccttaagaac cgtgcaggcc agtgttccag gcagtgggca
2641 gtgtgtgtga agggccctgg tgcttgagga cccacagagg gcctgtacta gagtggatat
2701 tacaggttat gacagggctg cagaggtgca agtccagaac aagatagctt cataggtctc
2761 taaggctctg gcttacttta tatcagggca gactgagcac tgggccaggg ctgttttggt
2821 tgaaaacaca gccagagttt ggtatgagaa agccaggagc atattgtaat ccaggtcaaa
2881 gatgataccc agatgtgggg gttggtgttg ggtggttgag aacgtgctag gaagcatctg
2941 cctgtttgct ccttcaagta acatacagag gtcaggaagc tgtcacctga ctgagtcagg
3001 ctctcgtgca cctcctgcac atcttaggtg actgttgtaa cgtgacctgg gccagcagac
3061 agatagaagc tcaccttctg gctaacacta atagatggct acgggctgcc tgtctggctt
3121 atgtacatct taggttggtg gcgctgtctg atgtgtttgt accatccact gagaacagag
3181 aactatgggc cagttttgag aaacgggtgg actggtttct gataccaatc atgagacgcc
3241 tgagagctcc aaataggatg tccacagaca gcccagaacc tgacaaggag atatgtggtt
3301 ggggatgtca tgtggtttat ccagcacaaa gttggttagg gaaatgggat ggagattgtg
3361 gtgggtaggt gtgcccatga agaatgtaga attagaagac acctagggca ttcgtggcag
3421 gatatggtct gctacttaga aggctgagga tcactgaaca aagaaatttg agatcagagc
3481 aatgtggaga gactctctct ttaagaaagc atttattgaa tggaaatcaa tactttttaa
3541 tatctgcaag ccaacgctga gctcacttta ttcaagaatg aataaacgag atgaatatac
3601 t