Sequences producing significant alignments: (Bits) Value

ref|NT_039301.5|Mm5_39341_35 Mus musculus chromosome 5 genomic c 211 4e-53
ref|NT_039674.5|Mm18_39714_35 Mus musculus chromosome 18 genomic 200 1e-49

Alignments

>ref|NT_039301.5|Mm5_39341_35 Mus musculus chromosome 5 genomic contig, strain C57BL/6J
Length=2364193

Features in this part of subject sequence:
hypothetical protein LOC67695

Score = 211 bits (114), Expect = 4e-53
Identities = 114/114 (100%), Gaps = 0/114 (0%)
Strand=Plus/Minus

Query 1 ATGATCACGGACGTGCAGCTCGCCATCTTCGCCAACATGCTGGGCGTGTCGCTTTTCTTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567926 ATGATCACGGACGTGCAGCTCGCCATCTTCGCCAACATGCTGGGCGTGTCGCTTTTCTTG 567867

Query 61 CTTGTGGTCCTCTATCACTACGTGGCAGTAAACAACCCCAAGAAGCAGGAATGA 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567866 CTTGTGGTCCTCTATCACTACGTGGCAGTAAACAACCCCAAGAAGCAGGAATGA 567813

>ref|NT_039674.5|Mm18_39714_35 Mus musculus chromosome 18 genomic contig, strain C57BL/6J
Length=73768173

Features in this part of subject sequence:
hypothetical protein XP_892432

Score = 200 bits (108), Expect = 1e-49
Identities = 112/114 (98%), Gaps = 0/114 (0%)
Strand=Plus/Plus

Query 1 ATGATCACGGACGTGCAGCTCGCCATCTTCGCCAACATGCTGGGCGTGTCGCTTTTCTTG 60
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 36090601 ATGATCACGGACGTGCAGCTCGCCATCTTCGCCCACATGCTGGGCATGTCGCTTTTCTTG 36090660

Query 61 CTTGTGGTCCTCTATCACTACGTGGCAGTAAACAACCCCAAGAAGCAGGAATGA 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 36090661 CTTGTGGTCCTCTATCACTACGTGGCAGTAAACAACCCCAAGAAGCAGGAATGA 36090714

Database: mouse build 35 genome database (reference assembly only)
Posted date: Dec 8, 2005 8:33 AM
Number of letters in database: -1,686,609,019
Number of sequences in database: 5,042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.33 0.621 1.12
Matrix: blastn matrix:1 -2
Gap Penalties: Existence: 0, Extension: 0
Number of Sequences: 5042
Number of Hits to DB: 45909
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 0.01: 0
Number of HSP's better than 0.01 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 114
Length of database: 2608358273
Length adjustment: 27
Effective length of query: 87
Effective length of database: 2608358273
Effective search space: 226927169751
Effective search space used: 226915326093
A: 0
X1: 17 (32.7 bits)
X2: 32 (59.1 bits)
X3: 54 (99.7 bits)
S1: 17 (32.5 bits)
S2: 24 (45.4 bits)