Sequences producing significant alignments: (Bits) Value

ref|NT_039457.5|Mm8_39497_35 Mus musculus chromosome 8 genomic c 320 8e-85
ref|NT_039460.5|Mm8_39500_35 Mus musculus chromosome 8 genomic c 169 3e-39

Alignments

>ref|NT_039457.5|Mm8_39497_35 Mus musculus chromosome 8 genomic contig, strain C57BL/6J
Length=5079299

Features flanking this part of subject sequence:
1095267 bp at 5' side: sarcoglycan zeta

Score = 320 bits (173), Expect = 8e-85
Identities = 173/173 (100%), Gaps = 0/173 (0%)
Strand=Plus/Plus

Query 137 aGAACCTTTTGGCTGAAAAAGTGGAGCAGCTGATGGAATGGAGTTCCAGGCGCTCGATCT 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4998604 AGAACCTTTTGGCTGAAAAAGTGGAGCAGCTGATGGAATGGAGTTCCAGGCGCTCGATCT 4998663

Query 197 TCAGAATGAACGGCGACAAGTTCCGGAAGTTTGTAAAAGCCCCACCTCGGAACTACTCCA 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4998664 TCAGAATGAACGGCGACAAGTTCCGGAAGTTTGTAAAAGCCCCACCTCGGAACTACTCCA 4998723

Query 257 TGATCGTCATGTTCACTGCTCTGCAGCCTCAGCGGCAGTGTTCTGTGTGCAGG 309
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4998724 TGATCGTCATGTTCACTGCTCTGCAGCCTCAGCGGCAGTGTTCTGTGTGCAGG 4998776

Features flanking this part of subject sequence:
1120125 bp at 5' side: sarcoglycan zeta

Score = 267 bits (144), Expect = 1e-68
Identities = 149/151 (98%), Gaps = 1/151 (0%)
Strand=Plus/Plus

Query 563 TTCATATTCGAGTTTTCCGGCCACCCAACTACTCAGGCACCATTGCTTTGGCCCTGTTAG 622
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5023462 TTCAGATTCGAGTTTTCCGGCCACCCAACTACTCAGGCACCATTGCTTTGGCCCTGTTAG 5023521

Query 623 TGTCACTGGTTGGTGGCTTGCTTTATCTAAGGAGGAACAACTTGGAGTTTATCTATAACA 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5023522 TGTCACTGGTTGGTGGCTTGCTTTATCTAAGGAGGAACAACTTGGAGTTTATCTATAACA 5023581

Query 683 AGACTGGTTGGGCCATGGTATCTCTGTGTAT 713
|||||||||||||||||||||||||| ||||
Sbjct 5023582 AGACTGGTTGGGCCATGGTATCTCTG-GTAT 5023611

Features flanking this part of subject sequence:
1116373 bp at 5' side: sarcoglycan zeta

Score = 261 bits (141), Expect = 5e-67
Identities = 143/144 (99%), Gaps = 0/144 (0%)
Strand=Plus/Plus

Query 424 CAGCTCAACATGAACTCCGCTCCCACATTCATGCATTTTCCTTCAAAAGGCAGACCCAAG 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5019710 CAGCTCAACATGAACTCCGCTCCCACATTCATGCATTTTCCTTCAAAAGGCAGACCCAAG 5019769

Query 484 AGAGCTGATACTTTTGACCTTCAACGAATTGGATTTGCAGCTGAGCAGCTAGCAAAATGG 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5019770 AGAGCTGATACTTTTGACCTTCAACGAATTGGATTTGCAGCTGAGCAGCTAGCAAAATGG 5019829

Query 544 GTTGCCGACAGGACGGATGTTCAT 567
|||||||||||||||||||||||
Sbjct 5019830 ATTGCCGACAGGACGGATGTTCAT 5019853

Features flanking this part of subject sequence:
1054817 bp at 5' side: sarcoglycan zeta

Score = 255 bits (138), Expect = 2e-65
Identities = 138/138 (100%), Gaps = 0/138 (0%)
Strand=Plus/Plus

Query 1 ATGAGTGCCAGGGCCGCTCCTTCACGCCGGAGACAGGCGGGCCGCCGGTTGCGCTAcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4958154 ATGAGTGCCAGGGCCGCTCCTTCACGCCGGAGACAGGCGGGCCGCCGGTTGCGCTACCTG 4958213

Query 61 cctactggtagctttcccttcctcctcttgctgctgctgctctgcatccagctcgggggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4958214 CCTACTGGTAGCTTTCCCTTCCTCCTCTTGCTGCTGCTGCTCTGCATCCAGCTCGGGGGC 4958273

Query 121 ggacagaagaaaaaggaG 138
||||||||||||||||||
Sbjct 4958274 GGACAGAAGAAAAAGGAG 4958291

Features flanking this part of subject sequence:
1111935 bp at 5' side: sarcoglycan zeta

Score = 226 bits (122), Expect = 2e-56
Identities = 127/129 (98%), Gaps = 1/129 (0%)
Strand=Plus/Plus

Query 298 TCTGTGTGCAGGCAGGCTAACGAAGAATATCAAATCCTGGCTAATTCCTGGCGTTATTCA 357
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5015272 TCTGT-TCCAGGCAGGCTAACGAAGAATATCAAATCCTGGCTAATTCCTGGCGTTATTCA 5015330

Query 358 TCTGCTTTTTGCAACAAACTGTTTTTTGGAATGGTGGACTATGATGAAGGGACAGATGTT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5015331 TCTGCTTTTTGCAACAAACTGTTTTTTGGAATGGTGGACTATGATGAAGGGACAGATGTT 5015390

Query 418 TTTCAACAG 426
|||||||||
Sbjct 5015391 TTTCAACAG 5015399

Features flanking this part of subject sequence:
1145661 bp at 5' side: sarcoglycan zeta

Score = 172 bits (93), Expect = 2e-40
Identities = 104/109 (95%), Gaps = 1/109 (0%)
Strand=Plus/Plus

Query 690 TTGGGCCATGGTATCTCTGTGTATAGTCTTTGCTATGACGTCTGGCCAGATGTGGAATCA 749
||| ||| |||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 5048998 TTGTGCCCTGGT-TTTCAGTGTATAGTCTTTGCTATGACGTCTGGCCAGATGTGGAATCA 5049056

Query 750 TATCCGTGGACCTCCATATGCTCATAAGAACCCACACAATGGACAAGTG 798
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5049057 TATCCGTGGACCTCCATATGCTCATAAGAACCCACACAATGGACAAGTG 5049105

Features flanking this part of subject sequence:
1175282 bp at 5' side: sarcoglycan zeta

Score = 121 bits (65), Expect = 9e-25
Identities = 65/65 (100%), Gaps = 0/65 (0%)
Strand=Plus/Plus

Query 798 GAGCTACATTCATGGAAGCAGCCAGGCTCAGTTTGTGGCAGAGTCACACATCATTCTAGT 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5078619 GAGCTACATTCATGGAAGCAGCCAGGCTCAGTTTGTGGCAGAGTCACACATCATTCTAGT 5078678

Query 858 ACTGA 862
|||||
Sbjct 5078679 ACTGA 5078683

>ref|NT_039460.5|Mm8_39500_35 Mus musculus chromosome 8 genomic contig, strain C57BL/6J
Length=15935254

Features in this part of subject sequence:
putative prostate cancer tumor suppressor

Score = 169 bits (91), Expect = 3e-39
Identities = 91/91 (100%), Gaps = 0/91 (0%)
Strand=Plus/Plus

Query 938 TCATTTGCCTCGTGGGATTGGGCTTGGTGGTCTTCTTCTTCAGTTTTCTCCTTTCAATAT 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1899 TCATTTGCCTCGTGGGATTGGGCTTGGTGGTCTTCTTCTTCAGTTTTCTCCTTTCAATAT 1958

Query 998 TTCGTTCAAAGTACCATGGCTATCCATATAG 1028
|||||||||||||||||||||||||||||||
Sbjct 1959 TTCGTTCAAAGTACCATGGCTATCCATATAG 1989

Database: mouse build 35 genome database (reference assembly only)
Posted date: Dec 8, 2005 8:33 AM
Number of letters in database: -1,686,609,019
Number of sequences in database: 5,042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.33 0.621 1.12
Matrix: blastn matrix:1 -2
Gap Penalties: Existence: 0, Extension: 0
Number of Sequences: 5042
Number of Hits to DB: 536747
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 0.01: 0
Number of HSP's better than 0.01 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 1041
Length of database: 2608358273
Length adjustment: 30
Effective length of query: 1011
Effective length of database: 2608358273
Effective search space: 2637050214003
Effective search space used: 2636897290143
A: 0
X1: 18 (34.6 bits)
X2: 32 (59.1 bits)
X3: 54 (99.7 bits)
S1: 18 (34.4 bits)
S2: 26 (49.1 bits)