Sequences producing significant alignments: (Bits) Value
ref|NT_039482.4|Mm9_39522_34 Mus musculus chromosome 9 genomic c 590 9e-166
Alignments
>ref|NT_039482.4|Mm9_39522_34 Mus musculus chromosome 9 genomic contig, strain C57BL/6J
Length=9596998
Features in this part of subject sequence:
source of immunodominant MHC-associated peptides
Score = 590 bits (307), Expect = 9e-166
Identities = 307/307 (100%), Gaps = 0/307 (0%)
Strand=Plus/Minus
Query 1 ATGGCGGAGCCCTCGGCCCCGGAGAGCAAGCACAAGTCGTCCCTCAACTCGTCCCCGTGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991225 ATGGCGGAGCCCTCGGCCCCGGAGAGCAAGCACAAGTCGTCCCTCAACTCGTCCCCGTGG 991166
Query 61 AGCGGCCTCATGGCTCTGGGGAACAGCCGCCACGGGCACCATGGGCCCGGAACCCAGAGC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991165 AGCGGCCTCATGGCTCTGGGGAACAGCCGCCACGGGCACCATGGGCCCGGAACCCAGAGC 991106
Query 121 GCGTCCAGGGCGGCGGCGCCGAAGCCGGGGCCCCCCGCGGGGCTGTCCGGGGGCTTGTCG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991105 GCGTCCAGGGCGGCGGCGCCGAAGCCGGGGCCCCCCGCGGGGCTGTCCGGGGGCTTGTCG 991046
Query 181 CAGCCGGCCGGGTGGCAGTCGTTGCTCTCCTTCACCATCCTCTTCCTGGCCTGGCTGGCC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991045 CAGCCGGCCGGGTGGCAGTCGTTGCTCTCCTTCACCATCCTCTTCCTGGCCTGGCTGGCC 990986
Query 241 GGCTTCAGCTCGCGCCTCTTCGCCGTCATCCGCTTCGAGAGCATCATCCACGAGTTCGAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990985 GGCTTCAGCTCGCGCCTCTTCGCCGTCATCCGCTTCGAGAGCATCATCCACGAGTTCGAC 990926
Query 301 CCGTGGT 307
|||||||
Sbjct 990925 CCGTGGT 990919
Features in this part of subject sequence:
source of immunodominant MHC-associated peptides
Score = 562 bits (292), Expect = 4e-157
Identities = 292/292 (100%), Gaps = 0/292 (0%)
Strand=Plus/Minus
Query 415 GTTTACCCAGGGTTGATGATAACAGCTGGCCTTATTCATTGGATTTTAAATACATTGAAC 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958159 GTTTACCCAGGGTTGATGATAACAGCTGGCCTTATTCATTGGATTTTAAATACATTGAAC 958100
Query 475 ATAACAGTTCACATAAGAGATGTGTGTGTATTCCTTGCACCAACTTTTAGCGGCCTTACA 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958099 ATAACAGTTCACATAAGAGATGTGTGTGTATTCCTTGCACCAACTTTTAGCGGCCTTACA 958040
Query 535 TCCATATCTACGTTCCTGCTAACTAGAGAACTGTGGAACCAAGGAGCAGGACTTCTAGCT 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958039 TCCATATCTACGTTCCTGCTAACTAGAGAACTGTGGAACCAAGGAGCAGGACTTCTAGCT 957980
Query 595 GCTTGCTTCATTGCTATCGTACCAGGGTACATATCTCGGTCAGTGGCGGGATCCTTTGAT 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957979 GCTTGCTTCATTGCTATCGTACCAGGGTACATATCTCGGTCAGTGGCGGGATCCTTTGAT 957920
Query 655 AATGAAGGCATTGCCATTTTTGCGCTTCAGTTCACTTACTACTTATGGGTAA 706
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957919 AATGAAGGCATTGCCATTTTTGCGCTTCAGTTCACTTACTACTTATGGGTAA 957868
Features in this part of subject sequence:
source of immunodominant MHC-associated peptides
Score = 417 bits (217), Expect = 1e-113
Identities = 217/217 (100%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 2175 GCAGCTAGATTTTCGCACTCCCCCAGGCTTTGACCGAACACGTAATGCTGAGATTGGAAA 2234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927504 GCAGCTAGATTTTCGCACTCCCCCAGGCTTTGACCGAACACGTAATGCTGAGATTGGAAA 927445
Query 2235 TAAAGACATTAAATTCAAGCATTTGGAGGAAGCTTTTACATCAGAGCACTGGCTTGTCAG 2294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927444 TAAAGACATTAAATTCAAGCATTTGGAGGAAGCTTTTACATCAGAGCACTGGCTTGTCAG 927385
Query 2295 GATATATAAAGTGAAAGCACCTGACAACAGGGAGACACTAGGTCACAAACCTCGAGTCAC 2354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927384 GATATATAAAGTGAAAGCACCTGACAACAGGGAGACACTAGGTCACAAACCTCGAGTCAC 927325
Query 2355 CAACATCGTCCCCAAACAGAAGTATTTGTCAAAGAAG 2391
|||||||||||||||||||||||||||||||||||||
Sbjct 927324 CAACATCGTCCCCAAACAGAAGTATTTGTCAAAGAAG 927288
Features in this part of subject sequence:
source of immunodominant MHC-associated peptides
Score = 412 bits (214), Expect = 6e-112
Identities = 214/214 (100%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 1318 GTCGCTCTGTATGCGATCAGTGCTGTCTACTTTGCCGGAGTGATGGTGCGGCTGATGCTG 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935209 GTCGCTCTGTATGCGATCAGTGCTGTCTACTTTGCCGGAGTGATGGTGCGGCTGATGCTG 935150
Query 1378 ACTCTGACCCCGGTCGTCTGCATGCTGTCGGCCATCGCCTTCTCCAATGTTTTTGAGCAC 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935149 ACTCTGACCCCGGTCGTCTGCATGCTGTCGGCCATCGCCTTCTCCAATGTTTTTGAGCAC 935090
Query 1438 TATTTGGGGGATGACATGAAAAGGGAAAACCCACCTGTGGAGGACAGCAGTGATGAGGAT 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935089 TATTTGGGGGATGACATGAAAAGGGAAAACCCACCTGTGGAGGACAGCAGTGATGAGGAT 935030
Query 1498 GACAAAAGAAACCCAGGAAACTTGTATGACAAGG 1531
||||||||||||||||||||||||||||||||||
Sbjct 935029 GACAAAAGAAACCCAGGAAACTTGTATGACAAGG 934996
Features in this part of subject sequence:
source of immunodominant MHC-associated peptides
Score = 365 bits (190), Expect = 5e-98
Identities = 190/190 (100%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 1529 AGGCAGGTAAAGTGAGGAAGCATGTGACAGAGCAAGAGAAACCTGAAGAGGGCTTGGGCC 1588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933852 AGGCAGGTAAAGTGAGGAAGCATGTGACAGAGCAAGAGAAACCTGAAGAGGGCTTGGGCC 933793
Query 1589 CCAACATCAAAAGCATTGTGACCATGCTGATGCTCATGCTCCTGATGATGTTCGCGGTCC 1648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933792 CCAACATCAAAAGCATTGTGACCATGCTGATGCTCATGCTCCTGATGATGTTCGCGGTCC 933733
Query 1649 ACTGCACGTGGGTCACAAGCAACGCCTACTCCAGTCCAAGTGTGGTCCTTGCCTCCTACA 1708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933732 ACTGCACGTGGGTCACAAGCAACGCCTACTCCAGTCCAAGTGTGGTCCTTGCCTCCTACA 933673
Query 1709 ATCATGATGG 1718
||||||||||
Sbjct 933672 ATCATGATGG 933663
Features in this part of subject sequence:
source of immunodominant MHC-associated peptides
Score = 339 bits (176), Expect = 6e-90
Identities = 179/180 (99%), Gaps = 1/180 (0%)
Strand=Plus/Minus
Query 1890 GGTCGGAAAAGCTATGTCTTCCAATGAAACGGCCGCCTATAAAATCATGAGGTCCCTTGA 1949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932117 GGTCGGAAAAGCTATGTCTTCCAATGAAACGGCCGCCTATAAAATCATGAGGTCCCTTGA 932058
Query 1950 TGTCGATTATGTGTTGGTTATTTTCGGAGGAGTGATTGGCTATTCCGGGGACGATATCAA 2009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932057 TGTCGATTATGTGTTGGTTATTTTCGGAGGAGTGATTGGCTATTCCGGGGACGATATCAA 931998
Query 2010 CAAGTTCCTCTGGATGGTCAGGATAGCTGAAGGGGAGCATCCCAAAGACATCCGGG-AAG 2068
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 931997 CAAGTTCCTCTGGATGGTCAGGATAGCTGAAGGGGAGCATCCCAAAGACATCCGGGTAAG 931938
Features in this part of subject sequence:
source of immunodominant MHC-associated peptides
Score = 337 bits (175), Expect = 2e-89
Identities = 175/175 (100%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 1718 GTACCAGGAATATATTAGATGATTTTAGAGAAGCGTACTTTTGGCTGAGACAAAACACGG 1777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933014 GTACCAGGAATATATTAGATGATTTTAGAGAAGCGTACTTTTGGCTGAGACAAAACACGG 932955
Query 1778 ATGAACACGCCCGGGTCATGTCGTGGTGGGACTACGGCTATCAGATTGCTGGCATGGCCA 1837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932954 ATGAACACGCCCGGGTCATGTCGTGGTGGGACTACGGCTATCAGATTGCTGGCATGGCCA 932895
Query 1838 ACAGGACCACTCTGGTGGATAACAACACCTGGAACAACAGCCACATCGCACTGGT 1892
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932894 ACAGGACCACTCTGGTGGATAACAACACCTGGAACAACAGCCACATCGCACTGGT 932840
Features in this part of subject sequence:
source of immunodominant MHC-associated peptides
Score = 300 bits (156), Expect = 2e-78
Identities = 156/156 (100%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 1163 GGTATGCAAAAATACACATTCCAATTATTGCATCAGTGTCTGAACATCAGCCTACGACAT 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936108 GGTATGCAAAAATACACATTCCAATTATTGCATCAGTGTCTGAACATCAGCCTACGACAT 936049
Query 1223 GGGTGTCTTTCTTCTTTGATCTACATATTCTTGTATGTACCTTCCCAGCAGGCCTATGGT 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936048 GGGTGTCTTTCTTCTTTGATCTACATATTCTTGTATGTACCTTCCCAGCAGGCCTATGGT 935989
Query 1283 TCTGCATCAAAAATATCAACGATGAAAGAGTATTTG 1318
||||||||||||||||||||||||||||||||||||
Sbjct 935988 TCTGCATCAAAAATATCAACGATGAAAGAGTATTTG 935953
Features in this part of subject sequence:
source of immunodominant MHC-associated peptides
Score = 292 bits (152), Expect = 4e-76
Identities = 152/152 (100%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 965 CAGGTGTCTTTGCGCTGCTGCAAGCTTACGCTTTTTTGCAGTATCTGAGAGACCGGTTGA 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938749 CAGGTGTCTTTGCGCTGCTGCAAGCTTACGCTTTTTTGCAGTATCTGAGAGACCGGTTGA 938690
Query 1025 CAAAACAGGAGTTCCAGACCCTTTTCTTTTTGGGTGTCTCACTAGCTGCAGGCGCTGTGT 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938689 CAAAACAGGAGTTCCAGACCCTTTTCTTTTTGGGTGTCTCACTAGCTGCAGGCGCTGTGT 938630
Query 1085 TCCTTAGTGTCATCTATCTGACATACACAGGT 1116
||||||||||||||||||||||||||||||||
Sbjct 938629 TCCTTAGTGTCATCTATCTGACATACACAGGT 938598
Features in this part of subject sequence:
source of immunodominant MHC-associated peptides
Score = 221 bits (115), Expect = 1e-54
Identities = 115/115 (100%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 2064 GGAAGGTGACTATTTCACCCAGCAGGGAGAGTTCCGAGTAGACAAAGCTGGGTCTCCTAC 2123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 929783 GGAAGGTGACTATTTCACCCAGCAGGGAGAGTTCCGAGTAGACAAAGCTGGGTCTCCTAC 929724
Query 2124 TCTGTTAAACTGCCTTATGTATAAAATGTCATACTACAGATTTGGAGAAATGCAG 2178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 929723 TCTGTTAAACTGCCTTATGTATAAAATGTCATACTACAGATTTGGAGAAATGCAG 929669
Features in this part of subject sequence:
source of immunodominant MHC-associated peptides
Score = 216 bits (112), Expect = 6e-53
Identities = 112/112 (100%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 305 GGTTTAACTATAGATCAACACATCATCTTGCATCTCATGGATTCTATGAGTTTCTAAATT 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961688 GGTTTAACTATAGATCAACACATCATCTTGCATCTCATGGATTCTATGAGTTTCTAAATT 961629
Query 365 GGTTTGATGAAAGAGCATGGTACCCACTGGGAAGAATAGTGGGTGGCACCGT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961628 GGTTTGATGAAAGAGCATGGTACCCACTGGGAAGAATAGTGGGTGGCACCGT 961577
Features in this part of subject sequence:
source of immunodominant MHC-associated peptides
Score = 202 bits (105), Expect = 7e-49
Identities = 105/105 (100%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 865 ATAGCATATAGCACTTTCTACATTGTGGGTTTAATATTATCCATGCAGATACCTTTTGTG 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939728 ATAGCATATAGCACTTTCTACATTGTGGGTTTAATATTATCCATGCAGATACCTTTTGTG 939669
Query 925 GGATTTCAGCCAATCAGAACAAGCGAGCACATGGCAGCTGCAGGT 969
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939668 GGATTTCAGCCAATCAGAACAAGCGAGCACATGGCAGCTGCAGGT 939624
Features in this part of subject sequence:
source of immunodominant MHC-associated peptides
Score = 194 bits (101), Expect = 1e-46
Identities = 104/105 (99%), Gaps = 1/105 (0%)
Strand=Plus/Minus
Query 764 ACATGGTCTCTGCGTGGGGAGGTTATGTGTTCATCATCAACCTCATCCCTCTCCATGTGT 823
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947361 ACA-GGTCTCTGCGTGGGGAGGTTATGTGTTCATCATCAACCTCATCCCTCTCCATGTGT 947303
Query 824 TTGTGTTGCTGCTGATGCAGAGGTACAGCAAGAGAGTCTACATAG 868
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947302 TTGTGTTGCTGCTGATGCAGAGGTACAGCAAGAGAGTCTACATAG 947258
Features in this part of subject sequence:
source of immunodominant MHC-associated peptides
Score = 160 bits (83), Expect = 4e-36
Identities = 83/83 (100%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 2390 AGACTACTAAAAGGAAGCGTGGCTACGTTAAAAATAAGCTAGTGTTTAAGAAAGGCAAGA 2449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925290 AGACTACTAAAAGGAAGCGTGGCTACGTTAAAAATAAGCTAGTGTTTAAGAAAGGCAAGA 925231
Query 2450 AGACCTCTAAGAAGACTGTTTAA 2472
|||||||||||||||||||||||
Sbjct 925230 AGACCTCTAAGAAGACTGTTTAA 925208
Features in this part of subject sequence:
source of immunodominant MHC-associated peptides
Score = 133 bits (69), Expect = 5e-28
Identities = 69/69 (100%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 702 GGTAAAGTCTGTGAAGACCGGGTCTGTGTTCTGGACAATGTGCTGCTGCTTGTCATATTT 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948540 GGTAAAGTCTGTGAAGACCGGGTCTGTGTTCTGGACAATGTGCTGCTGCTTGTCATATTT 948481
Query 762 CTACATGGT 770
|||||||||
Sbjct 948480 CTACATGGT 948472
Features in this part of subject sequence:
source of immunodominant MHC-associated peptides
Score = 104 bits (54), Expect = 2e-19
Identities = 54/54 (100%), Gaps = 0/54 (0%)
Strand=Plus/Minus
Query 1113 AGGTTATATTGCACCATGGAGTGGCAGGTTTTATTCACTATGGGATACTGGGTA 1166
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937347 AGGTTATATTGCACCATGGAGTGGCAGGTTTTATTCACTATGGGATACTGGGTA 937294