Sequence for Molecular Beacon: 1-1194
1 atgagtgtgg ggcgtcgaag agtcaagttg ctgggcatcc tgatgatggc aaatgtcttc
61 atttatttga ttgtggaagt ctccaaaaac agtagccaag acaaaaatgg aaagggagga
121 gtaataatcc cgaaagagaa gttctggaag ccacccagca ctccccgggc atactggaac
181 agggaacagg agaagctgaa caggtggtac aatcccatct tgaacagggt ggccaatcag
241 acaggggagc tagccacatc tccaaacaca agtcacctga gctattgtga accagactcg
301 acggtcatga cagctgtgac agattttaat aatctgccgg acagatttaa agactttctc
361 ttgtatttga gatgccggaa ttactcgctg cttatagatc aaccgaagaa atgtgcaaag
421 aagcccttct tactattggc gataaagtcc ctcattccac attttgccag aaggcaagca
481 attcgggagt cttggggccg agaaaccaac gtagggaacc agacagtagt gagggtcttc
541 ctgttgggca agacaccccc agaggacaac caccctgacc tttcggacat gcttaagttt
601 gagagtgaca agcaccagga catcctcatg tggaactata gagacacatt cttcaacctg
661 tccctgaagg aagtgctgtt tcttaggtgg gtgagcactt cctgtccaga cgcagagttt
721 gtcttcaagg gcgatgatga cgtgtttgtg aacacccatc acatccttaa ttacttgaat
781 agcttatcca agagcaaagc caaagacttg ttcataggtg acgtgatcca caatgctggg
841 cctcaccggg ataagaaact gaagtactac atcccagaag tcttctacac cggcgtctac
901 ccaccgtatg ccgggggtgg tggattcctg tactccggcc cccttgcctt gaggctgtac
961 agtgcgacta gccgggtcca tctctaccct attgatgatg tttatacggg aatgtgcctt
1021 cagaaactgg gccttgttcc agagaagcac aaaggcttca ggacatttga tattgaagag
1081 aaaaataaga aaaatatttg ttcctatata gacctaatgt tagtacatag cagaaaacct
1141 caagagatga ttgatatctg gtctcagttg caaagtccta atttaaaatg ctga

Checked:
ggcgtctac
901 ccaccgtatg ccgggggtgg tggattcctg tactccggcc cccttgcctt gaggctgtac
961 agtgcgacta gccggg

Primer3:
WARNING: Numbers in input sequence were deleted.
PRIMER PICKING RESULTS FOR GT31M16

No mispriming library specified
Using 1-based sequence positions
OLIGO start len tm gc% any 3' seq
LEFT PRIMER 683 20 60.11 55.00 4.00 2.00 ttaggtgggtgagcacttcc
RIGHT PRIMER 760 20 59.86 50.00 6.00 4.00 gatgggtgttcacaaacacg
SEQUENCE SIZE: 1194
INCLUDED REGION SIZE: 1194

PRODUCT SIZE: 78, PAIR ANY COMPL: 6.00, PAIR 3' COMPL: 3.00

1 atgagtgtggggcgtcgaagagtcaagttgctgggcatcctgatgatggcaaatgtcttc

61 atttatttgattgtggaagtctccaaaaacagtagccaagacaaaaatggaaagggagga

121 gtaataatcccgaaagagaagttctggaagccacccagcactccccgggcatactggaac

181 agggaacaggagaagctgaacaggtggtacaatcccatcttgaacagggtggccaatcag

241 acaggggagctagccacatctccaaacacaagtcacctgagctattgtgaaccagactcg

301 acggtcatgacagctgtgacagattttaataatctgccggacagatttaaagactttctc

361 ttgtatttgagatgccggaattactcgctgcttatagatcaaccgaagaaatgtgcaaag

421 aagcccttcttactattggcgataaagtccctcattccacattttgccagaaggcaagca

481 attcgggagtcttggggccgagaaaccaacgtagggaaccagacagtagtgagggtcttc

541 ctgttgggcaagacacccccagaggacaaccaccctgacctttcggacatgcttaagttt

601 gagagtgacaagcaccaggacatcctcatgtggaactatagagacacattcttcaacctg

661 tccctgaaggaagtgctgtttcttaggtgggtgagcacttcctgtccagacgcagagttt
>>>>>>>>>>>>>>>>>>>>

721 gtcttcaagggcgatgatgacgtgtttgtgaacacccatcacatccttaattacttgaat
<<<<<<<<<<<<<<<<<<<<

781 agcttatccaagagcaaagccaaagacttgttcataggtgacgtgatccacaatgctggg

841 cctcaccgggataagaaactgaagtactacatcccagaagtcttctacaccggcgtctac

901 ccaccgtatgccgggggtggtggattcctgtactccggcccccttgccttgaggctgtac

961 agtgcgactagccgggtccatctctaccctattgatgatgtttatacgggaatgtgcctt

1021 cagaaactgggccttgttccagagaagcacaaaggcttcaggacatttgatattgaagag

1081 aaaaataagaaaaatatttgttcctatatagacctaatgttagtacatagcagaaaacct

1141 caagagatgattgatatctggtctcagttgcaaagtcctaatttaaaatgctga

KEYS (in order of precedence):
>>>>>> left primer
<<<<<< right primer

ADDITIONAL OLIGOS
start len tm gc% any 3' seq

1 LEFT PRIMER 535 20 59.70 55.00 5.00 5.00 gtcttcctgttgggcaagac
RIGHT PRIMER 619 20 60.02 55.00 3.00 1.00 cctggtgcttgtcactctca
PRODUCT SIZE: 85, PAIR ANY COMPL: 4.00, PAIR 3' COMPL: 2.00

2 LEFT PRIMER 683 20 60.11 55.00 4.00 2.00 ttaggtgggtgagcacttcc
RIGHT PRIMER 766 20 60.23 50.00 5.00 4.00 ggatgtgatgggtgttcaca
PRODUCT SIZE: 84, PAIR ANY COMPL: 6.00, PAIR 3' COMPL: 3.00

3 LEFT PRIMER 684 20 59.72 55.00 4.00 2.00 taggtgggtgagcacttcct
RIGHT PRIMER 760 20 59.86 50.00 6.00 4.00 gatgggtgttcacaaacacg
PRODUCT SIZE: 77, PAIR ANY COMPL: 6.00, PAIR 3' COMPL: 2.00

4 LEFT PRIMER 684 20 59.72 55.00 4.00 2.00 taggtgggtgagcacttcct
RIGHT PRIMER 766 20 60.23 50.00 5.00 4.00 ggatgtgatgggtgttcaca
PRODUCT SIZE: 83, PAIR ANY COMPL: 6.00, PAIR 3' COMPL: 3.00

Statistics
con too in in no tm tm high high high
sid many tar excl bad GC too too any 3' poly end
ered Ns get reg GC% clamp low high compl compl X stab ok
Left 2911 0 0 0 41 0 1697 627 2 0 215 60 269
Right 2887 0 0 0 38 0 1734 573 0 0 228 55 259
Pair Stats:
considered 2024, unacceptable product size 2010, ok 14
primer3 release 0.9

(primer3_www_results.cgi v 0.2)
Original sequence works.

VALIDATED PRIMERS:

LEFT PRIMER 683 20 60.11 55.00 4.00 2.00 ttaggtgggtgagcacttcc
RIGHT PRIMER 760 20 59.86 50.00 6.00 4.00 gatgggtgttcacaaacacg